PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA30154
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 323aa    MW: 35960.6 Da    PI: 5.4098
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA30154genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05105126223
                                EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                +C++C+k Fs++  +  H++ H
  Tp57577_TGAC_v2_mRNA30154 105 PCHYCDKKFSSPQAFGGHQNAH 126
                                6**************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.785104131IPR007087Zinc finger, C2H2
SuperFamilySSF576675.49E-5105133No hitNo description
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSERISIENV EDRKLKHKME EKSEPRFEKE PKALPASSQS DVEAIVTPRL DICTKSTSTP  60
LEIGEHSNSS QNATGELSSQ NTTGEPSYKN ATDEPLPEQE VREIPCHYCD KKFSSPQAFG  120
GHQNAHKRER YFKKIEDQRR EDEINSIIGF RSSNQIYPYS FSSPINYQRY SYFRNANFPH  180
LISPSMNNTM TSWASGSPSS GYGGLYMPNT TPTIPQFVMQ MPNSSFTTPQ FGIPNFWDGN  240
QNASLPIPQR SNTFGLGLFS QANQTPSIVE GAERNVNAQL GSQTLQLLPH DPIREGPNQA  300
NPNTSLSSAQ STSEEVNLDL TL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493356.12e-87PREDICTED: zinc finger protein 3-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.13e-09C2H2 family protein